Similar regions between promoters of ywaD
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTCGAAGAGCGAGGCGCGCCGCATGATTCAAAACGGAGGTGTACGCATCGACGGAGAGAA hal ........................GATTCAAATTGTAGGAG...............ACAG -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGTAACAGATGTTCACGCCAAAGCAGAGATAAGAGAGAATATGATCATCCAAGTCGGCAA hal AGGAACAGTTGT................ATATGAAAGGGTTTGCTCATC.....CGGCCA -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]] sub ACGCAAGTTTTTAAAGCTCCAATAATCTGATATTCCGAAACGCTTATGACCCTTCATTCA hal AAGGGGGTTTT---ATCATGAATTATCTGTTA............................ -180 -170 -160 -150 -140 -130 ]]]]]] sub TAAGCGTTTTTTTGCAGGTATAAAGCACTGTCTTTTCAAAAACGCTCTCCATCTTGCAGG hal ..................TATCATGAATTATCTGTTAACAAAAATTATC-ATTTTACAGT -120 -110 -100 -90 -80 -70 sub AAACTCCTTTAGCATCCCGAAATATTCCCCAACCATACATTTAGGGGAGGTTTATTTTTG hal AAATT...............................AGATTAATAGGAGGGTTAT..... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...