Similar regions between promoters of ywkD
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CCAGCTGTTCTGACGCATCTCTGTATTGTCTATATACGTCAACTGTTTCTTGTATATCAG ste .....................TGTAAGGGATTTTGTCGAAAAATATTTTTTGGACACC.. -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATTGCTCTTTTGAATATTCTCTTAGCTTTTTCGGATCGTTGACTACTTCTGGATCGCTCA ste .........TTGAATACGCT......TTTTTTGGA...TTGGACACCCCTGAGGGGCCGA -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AAAGCTCATTTAATTTCTCGTATCGTTCTTCAATTGATTTTAAACGGTCTAACACGGTCT ste AAAGC....................................................... -180 -170 -160 -150 -140 -130 sub TCACCTCTGTTTTCCTGTGCGTAACATTCTCATTATAGTATAGTGATTAACCCCAGTCAA ste .....................................................CATTGAA -120 -110 -100 -90 -80 -70 sub AAGCATTTCAATCCCAGCTGGAAAAGCTCCCTCTGCTATACTGGAATTCGAGGAGGGATG ste TACGCTTCCTCCCACGGAAGGAAAATATCCC............................. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...