Similar regions between promoters of ywoF

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCAGCCACAATGTTAGGAGCGCTGATTTCGCTGATTGGCATGTATGTTCCTGTATTGAAG hal ..................................TTGGCCGGAATGATCACGT...GAAG -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGCTTATACGATATTTCTTGGTTTGTAGGTGTGCTGATTTCCTTTCTTTTCTACATTGTT hal AGATTAAGCGCGATGT............................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTGATGCGTGTTCACCCGCCTGCATCATTGGCAATTGAAACAGTTGAACATGCGCAGGTC hal .....................GCATCACTCAAAATCGA...................... -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>> sub CGCCAGGCTGAATAAGATCTATTTAGACGGTATATTTTCAT---ATTTTTGAAATGGTTT hal .........GATTAAGCGCGATGTAGCAGATCTATTCTCACGTAATTTTTG......... -120 -110 -100 -90 -80 -70 sub TCCATAAATAGAACATTTATAATGGTTTTAGAAATCTATTCTAAAACGAAATGGGAATCG hal ...............................AGATCTATTCTCA................ -60 -50 -40 -30 -20 -10 sub AAA hal ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...