Similar regions between promoters of yxaH
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCACTCCTATCGCCTTGATTCTCACTATACAAAGATGGTGGGCGTATTGGTTCCTGGTTT hal TCACTCCT.................................................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATTTGAACCGTTTTTCCGGACGTTAGGCGACCCGTATGAAGGCCACATCTTCCCATGTAA hal ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCCTCAGGCTTTGCGCTTTGATCGCATTTTGCAGAATATCGAAGCATTAGATTTAAAGGT hal ................................AGGAAATCCTAGGCATCGATTTAAAAGG -180 -170 -160 -150 -140 -130 > >>>>>>>>>>>> sub G----ATGAAACCATAAAGATGACAAGATTGTAAGGTTTTCATGCCGGCCTGACACCTAA hal GGGACATGAAACCCTCACGATGACAATTTTGTAAGCTTTCTTACCCTCTTTGCAATCTCA -120 -110 -100 -90 -80 -70 sub ATCGATGTTACCGCGCTTCATTTTTTCCTACCCTTAAGGTACAGAAAAAAGGAGCGTGAT hal ATCGATGGTTC............TTTCTTACCCT...............AGGAGAGTGA. -60 -50 -40 -30 -20 -10 sub GGCT hal .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...