Similar regions between promoters of abrB
sub AAAGTCTGTTCGTGTCGAATTTTGTCGTATATAATCAAATGAA--ATAAAAAACTTTGGT hal ...........GTGTCGAATTTTGTC-TACTTCGAGTGACGAA--ATAGTTGACCTTTCT ste ................GAAATTTGTCGAATATTGACGAATAAACGACAAAAAACTTTTTT -300 -290 -280 -270 -260 -250 sub TCGAAAGTCTTG---ATTTAAA--AGGATTTTTAGTAGGAT--AATAGCTTT--ATTAAA hal TTTAAGATATCGTTAATTTTCGTCAGTTTTTCTATTAAATCTGAAGAGATTTCAATCATA ste GCGGA....................................................... -240 -230 -220 -210 -200 sub TATTTATAAAATGCTGT---TATTTCGGTAGTTTCCAAGACATTACTGACTATAAGAACT hal TTTTCATCCTTTCGTTTACGTAATACGTTGATATAAAAGGAAT--CTAGCAAAAAGGAAA ste ........................TCGGGAGGGTGCGAAATGTGAGTT-CTAAACAAACT -190 -180 -170 -160 -150 -140 @@@@@ @@@@@@@@@@@@@@@@@@@@@@@@@ sub AATTCTTACAATCAATAGTAAACAAAA---TGATTGACGATTATTGGAAACCTTGTTATG hal AAAT--TACATTGAATTTTTCTCAAAAAAGTAATTGACTTGTTTTGGAAACATTGGTATT ste TTTTTTTGAAAT-AACAATATACAAAA---GGATTGACGCTTAATGGAAACACTGATATG -130 -120 -110 -100 -90 -80 @@@@@@@@@@@@@@@@@@@@@@@@@@@@ sub CTATGA--AGGTAAGGATTTTGTCGAATAATGACGAAGAAAAATATAATTTAAACAAATA hal CTTAGTTCAGATAAAAAAAT-GTCGAATTATGAC------ACATTTTATA-AAACAGATT ste ATTAGG--TTGTAGGAAATTTGTCGAATATTGACGAATAAA................... -70 -60 -50 -40 -30 -20 sub AGTATCTCTTGGGAGGAGA hal TATTTTTTTCGGGAGGAGA ste ................... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...