Similar regions between promoters of adeC

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTAACATCGTAGCCATAAAAAGGGGCAAGGAAGTCATCGTATCACCGCTTGCAACCGAAG hal .............CAGAAACAGGGGCAAGTAAGTCATTTTATCA................ ste .TAACATTGTTACGTTGTAAAGAG...........AGCGGTTGACAGCTTGCCATCTAGC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCATCCACCAAGAAGATATACTCATTGTTATTGGATCAGTTACAGACATCTCCCGTTTCG hal ..............GATTTTGTCATTGTT............................... ste TCAT...............................TCAGCTCGAG-CAGTTCTTTTTTCG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>> sub AAAAAAGAGTTCTTCATACAAAATAGCAGCCAAATAAGCCGTCCTCAAAGGGCGGTTTTT hal .............................................CAAAAGATTGTTAGT ste AAA....AGTTCTTTTTTCGAAAT.................................... -180 -170 -160 -150 -140 -130 sub CATATTATCAGAATATAACAACTTTAA--TGAACTGAGCGTCAATTTCTTAAAATTTCAT hal CATTTTATCA..........................AGCGACCATTTCTTAAAATGACGT ste ...ATAATCGTAACATAACATTGTTACGTTGTAAAGAGTGTGAA..TCGTAACATAACAT -120 -110 -100 -90 -80 -70 sub TG--ACTAAGCACAGGCGTTCCGATAGCATATTGTACCATATAATAAAAAAAGGAGGGGC hal TAGAACGAATCAAAGACGTT.......CATCGTTTTCGATACAATAGGAAAA........ ste TG.........................................ATGAAGAAAGGAG.... -60 -50 -40 -30 -20 -10 sub CTAT hal .... ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...