Similar regions between promoters of ampS
>>>> sub TTTTTCCTCACTTCCTTCATATTGTGGGAAATGGAGAAACGTTAAGGAGGAAACAGATGC hal ...............TTTTTATAGAGGGAGTTCGCGAACC.......ATGAAAAAGTTGG ste ...TTCTTTACTCTTTACATAT.....................AAGGAGTGAACA..... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TAAGAGATTTAGGAAGAAGAGTAGCGATCGCAGCCATTTTAAGCGGAATTATTCTTGGAG hal TAAGATAATT................................GTGAAATTCTTCATGG.. ste .................ATAGTGCCGATGTCAACGACATTTAGTAGTCTTCACCATGGA. -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCATGAGCATTTCTT--TGGCAAATATGCCCCATTCGCCTGCAGGCGGCACTGTAAAACT hal .CCTGTGAAATTCTTCATGGCAA...........TCGCCGGCTAGCGGCAAACGAAAA.. ste .............TT--TGCCCTACACCCCCCTTTC-CATAAAAAGGGCACTATCA.... -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] sub GAATCATCCATAATATTGAAAAAACCCAAGACGTGTCGTTTTGGGTTTTTCACTTTGGGC hal ...................AAAAACCCTCGCCG......TATAGCTTATCCAGTTTGGGT ste ..................................GACATTTAGTAGTCTTCACCATGGAA -120 -110 -100 -90 -80 -70 sub ----TCCTTCTTTCCTTTATAGGATCATATTTGATATGATGAGAAAAAAGCTTGGAGGAA hal AGCGTCATCCTTTTCTTACTATGAAAA-AGTTGGTAAGATAA.................. ste ----AC-TTCTTTACTCTTTA.....AAAGTGGAGATGAGTCCAAAAAA........... -60 -50 -40 -30 -20 -10 sub TGATTC hal ...... ste ...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...