Similar regions between promoters of asnS

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>> sub ATTTGTTAAAGCGCTTCTCGAGGAGGAAAAAGTTGCGATTGTTCCAGG-ATCCGGATTTG hal .................................TTCAATTTTTCCAGA-A.......... ste ......TAAGGCGCTTTGCGCCAAGG........GCGATTGGTGGGGGCAGCATCGTTTT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCTCTCCTGAGAATGTCCGTCTTTCTTATGCAACATCGTTAGATCTTCTTGAAGAAGCCA hal ...CTCCAAAAAATGAAGGTCAGCTTTATTACACAAGTCTTCAACTTCTACACAATGGTA ste GCGCTGCTTTGGCTGGTCGT...............TCGCTTGAGGCGCTCGAGACAGCGA -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]] sub TTGAAAGAATCAAGCGTTTTGTAGAAAAACATAGCTAACAGATCAAAAAGCGGCTGACAG hal GTCATTGACTTCAAT-TTTTCCAGAAGTATATA........................... ste TCGAACGCATCCGCCGGTTTATGGA..................................G -180 -170 -160 -150 -140 -130 ]]]]]]]]] sub AAAAGCCGCTTTTTATCTGCATTGACCCGGTTAGTTAAGAGCGGGTATAATAAAGTGATG hal ............................................GTATAACAAAGAGCTC ste CAAAGCCGCTTTTT....GCATCCGCCGGTTTATGGAGGCGCGGGCCTAA.......... -120 -110 -100 -90 -80 -70 sub ATAAAAGAGTTCGCGGGGCAATGAGCTTCCGAATGTCTTTCTTGTTTTGGAGGGAAATAT hal CAAAAA............CAAAGAGCTCCAAAA..............TGGAGGGAAAGA. ste ............................................TATTGGAGGGAA.... -60 -50 -40 -30 -20 -10 sub G hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...