Similar regions between promoters of comFA
>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GACGAAGATGCGAGTAAAGGGTTGC--CTATGCGAGCTGCTGTTATCCACGCTAATCGAG hal ...GAAGAAGCGTCTTCTGCCTCAT--CGGTTAAAGCGACTGTTATTCATGCGAATCGAT ste .......ATGCGCTTCAAGCCTCTCAGCTTGGGGAGAGGGTGTTTTCCATG......GAA -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGGAAGAAGCAGCGAAAATCATTGAAGAGCTTTCTGCAAAATATCCTCATGTTGAATTTT hal TGGACGGAGCAGAAAAGCTGGCAGATGAGATCAGAAGTCAATTTTCCCATGTAGATGTAA ste TGGCAAAAGGAGTGATGCTCATTGTACA................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATAACAGCTATTTTGGCGCGGTAATCGGCACTCATTTGGGTGAAGGTGCGTTAGGAATTT hal GCATTAGCCATTTCGGACCAGTGATCGGTACCCACCTCGGTGAAGGTAGTATAGGGCTAT ste ..........TTTATGCGCTTCAAGCCTCTCAGCTTGGGGAGAGGGTGTTTT........ -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]]] sub GCTGGTGTTTTAAATAAGGCCAAATCTCCGTTTTTAGAGCGGAGATTTTTTTATATTCTT hal CTTGGTATATTGAAAAA..................AGATGGGAG-TGTTTTTATTTTC.. ste ...........................CCGTTTTGTGCATGGCGTCCATTTTTTATCACC -120 -110 -100 -90 -80 -70 sub ATTTTAATAGTTGGACAGAAAATATTCATTCAGGCATACTGTTTCGAAAGGAGGCGTGCT hal ............................................................ ste TTTCTAA............................ATTCCATTTGGAAAGG......... -60 -50 -40 -30 -20 -10 sub AT hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...