Similar regions between promoters of cotD
]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] sub AAAGCGCAAAAGACGACTTGTTTCGCCATGAATTTTTTTTGCTGAATTCACATTGAT-TT hal AACGTCCAAAATTAGA--TGATTCACCTTGAATT...........ATTCACCTTGAA-TT ste .......AAAAGACGAAT..............TCTTTTTTATTGTCGTCGGTTTGACGTT -300 -290 -280 -270 -260 -250 sub TGTTGTAGAATAGCGGCGAATCCTGTAAAATGACGTTAGTTATTTTTAAAGGGAGAGTTG hal AGGT................................................GAGTGGTT ste TGTCGT........................TGACGTTTGTCGTGTTCAA........... -240 -230 -220 -210 -200 -190 sub GTATGTATAAGGGTGTTTTTTACT-TGTTCTTTGTTGTGGTATTTTTGATTGCTTTTGTG hal GCATTGACTCGCGCATTGTTAATTATGTTCTTTGTTCT----TATCGGAATGGTGTTGTT ste GCATGTACAAAAAAATTTTGTATC-TCTTTTTTATTGTCGTCGGTTTGACGTTTGTCGTG -180 -170 -160 -150 -140 -130 @@@@@@@@@@@@@@@@@@@ @@@@@@@@@@@@ @@@@@@ sub TTTTCAAACTTTAAAGACAGCTTAATTGCACACTTTTAAAATAGGTCTTTGCATCAGAAC hal TTTTGCCACTC-AATTACATGATAAA-GCCATTTTTTAACAGGTGGCTATGTGTGCGAAC ste TT................................TTCAAAATGGGTGTTTATACTAGTAC -120 -110 -100 -90 -80 -70 @@@@@@@@@ sub ATGTACCCCTTATTTTTCATAACTTAGTATTGTAATAAAGTTTATGGAAAGGGGATTTTA hal GT.......................................................... ste GAGTCCACTCCGTTCATCATAGGCTAGTATTGTCA......................... -60 -50 -40 -30 -20 -10 sub TC hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...