Similar regions between promoters of cotE
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]] ]]]]]]]]] sub TCAAAGGTGAAGCATTCAAATAACAGCTGTTCTCTCTAAACACGGTGCCT-TTACAGGCC hal ...................................CTAAACAGGCTTCCCGTTACA.GAC ste .....................................AAACACGGCGGCT.......... -300 -290 -280 -270 -260 -250 ]]]]] sub CGTGTTTTTTTATCATTTGTGCGGTTAAAAATGAACTAAATAATCTATGTACCAAATGTT hal CGTCTCTGTTTATC.....................................CGAATTCTT ste ....TTTTTTTCTTATGGGCGCGCT..ACAATGAACTATA.................... -240 -230 -220 -210 -200 -190 sub CAATTGGTTTTTCTGTGCTCAGCCGCGTATAAACTTTATCGCACTTATAAGTAAAGTTTC hal TTCTTTCTTTTTCTG............................................. ste ........TTTGCTGTGCACATTAGCGGAGA............................. -180 -170 -160 -150 -140 -130 sub TAGGCACCCC--TGCATACAATGGAACAGAAACT--TTGTATTTTTATATTTTATTTATA hal .AGGCTTCCCGTTACATATCGTGTTACAGACAGAGCTTGAATCGAATTCTTTTCTTTCTT ste .............GCATACAATGAA................................... -120 -110 -100 -90 -80 -70 sub AAAATGCACACTAGACAA-ATGCCCAGCATAAGATAACACGAAGAAGAACAAGGAGGCAT hal TTTCTGCACACTAGTCAT-TTGCCCCGCATAGGAT......................... ste ....TGCACATTAGCGGAGATGGC--GCATAGGATGAAATGAAGA..AAAAAGAAGGCA. -60 -50 -40 -30 -20 -10 sub GCCGGA hal ...... ste ...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...