Similar regions between promoters of csbA
sub AAATGAATAGTTAAGTTGGTTATATTATCCTGAAAAATGCGGCCGTACTGGTACTGTATG hal ............................................................ ste ....GAATGGATCATGTGGTTTT.........AAAAATGGGGC................. -300 -290 -280 -270 -260 -250 sub CCTATTTTCTTTTATTCTCGGAATCTGGCGGCGGACTTGATGATGTAATAAAAAAAGTGC hal ...................................CTTGGTGTACTATTAGTAAAAG... ste ............................................................ -240 -230 -220 -210 -200 -190 sub CGCTGATTAGAACAGCGGCACCATGGAATAAGTTTTGACCGGCACCAAAATGCAAATA-T hal ........AGAACATCATCAGCTTGGTGTA.............................. ste ......................................CCGGCTCGAAAGCGGAAAAAAT -180 -170 -160 -150 -140 -130 sub GGTGATTGATTTTGGCTGAAAAGGGGTATGGTGTAAGTAGAGGGAGCGAATGCACGATTG hal ....ATCGTATTTGCATTAAAAGGAG.................................. ste GGGGCTT..........GTAAAGGAGAATGG............................G -120 -110 -100 -90 -80 -70 sub TCCGATTCTTCATTTTTTACTATAATCAGATCAGATGAAGAATCCCTGAGGAGGGTTTTT hal ....ATTCTGCATTTTGT.......................................... ste TCCGTTTCGTC.......................AAGGAGAATGGATCATGTGGTTTTTG -60 -50 -40 -30 -20 -10 sub G hal . ste G -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...