Similar regions between promoters of ctaC

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTACTCGCTTAACTACATGACAATCTATTTCGTTGCCATGGTTGTCTTGACGCTTTTCTA hal .TATTCGTTAAATTATTTAACGATTCTTTTTGTTCTTATGGTCGT............... ste .TATTCGCTCAACTACTTGACGATTTTGTTCGTGGCGATGGTCATCGCGACGCTTTGGTG -300 -290 -280 -270 -260 -250 > sub AAAAATAGATATGATGCTTGTTTTATCGCTTCAAAATAAACGATGACAACTAGTAAATGC hal .........................TGGATTTAAGATGAAGGATGAC............. ste AATTA-AGATAAAATTCTTTCTTTA................................... -240 -230 -220 -210 -200 -190 sub CGCCTTGACCTCTTGTTTAATCAGGC--GGCTTTACTTTTATACATAGATGGCATTTTGA hal .........CTTTTTGTTCTTATGGT--CGTTGTCCATTTATAAATGGATGACGGCTATA ste ..CGTTGCCGTTTTACTTGTTCTCGCTTGGCGTTCCATTTTTA................. -180 -170 -160 -150 -140 -130 sub GTAAAAAAACTCATAATTTAAGAGAAGAGGAAATGTAAGTGCTTTATTGGTGATAGGTTG hal ATATAAAATTTCACAATTGTAGTG.................................... ste ...ATAAAATTCTTTCTTTAAGTGAA.................................. -120 -110 -100 -90 -80 -70 sub GATGGCGATAGATTTCGATCCGCTTTCCGCCTTTGTATTGACCAGAAAAGGGGTTGGGTG hal .ATGGTGATCTACGTCGTGGCACTGACCATCGTTTCATTGA.......AGGGGTTGGCTG ste ..TGGCGATGGTCATCGCGACGCTTT.................................. -60 -50 -40 -30 -20 -10 sub AA hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...