Similar regions between promoters of ctrA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAGATATTATTGATGAAGATGATGAAGACTATGATGATGAAGAAGAGGAAATTAAATAGT hal ..................ATGATTCATGCTAAGAGAATGAA................... ste .........TTGATGAAGAGCTTGATCTCGAAGAGCCGGAGGAAGACGAA.......... -300 -290 -280 -270 -260 -250 sub ATCAGATTTCATCTTCAAAACGATCTTGACTT-TCATAGTCGAACTATGTAGTATGTATT hal ........................CTTGACTTCTCATAAA-GAACTCGGTAGAATCATTT ste ........................CTTGACTT-TGCCAGGGGAACCCGGTACAATGTGTG -240 -230 -220 -210 -200 -190 ]]]]]]]]]]]]]]]]]]]] sub TTGGGCTCTTCAAAAACGAAGAGAGAACATAGTACGTTATGCTCCCTTTCAAGAAATTGA hal TTGGGCT.............................TAATGATTCATGCTAAGAGAATGA ste TTGGGCTCTTGAAAA-CGAACAAA................GCTCCCTT--ACGTACGGTA -180 -170 -160 -150 -140 -130 ]]]]]]]] sub AAGGGAGC-TTTCTTATTTTCACCCCTCATTTTTCTTATAAATCATTTAAAAGGCTAAAT hal AA........................TCATTTTTGGGCTAAAGAAATCAATA....AAAT ste AGCGGAGCGTTTTTTATTTGCGCCTTTC................................ -120 -110 -100 -90 -80 -70 sub GATTTTTTATAAAATAGTACATTTTAAAAATGTAGCTAAGAGCGAAGAGAGGAGCAAACG hal CAATACTTCTAAAAAAATAAAAAGCAAAAGTG............................ ste ............................................................ -60 -50 -40 -30 -20 -10 sub AA hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...