Similar regions between promoters of dnaA

sub TTGTGACAACCATTGCAAGCTCTCGTTTATTTTGGTATTATATTTGTGTTTTAACTCTTG hal .............TGTAGTCTGTAGTTTATTTTTTTA.....TTATTGTTTTACACGTGG ste .........CCGTTGCAACAAGCCGCTTTATTTGCTATTATTATTGTGTTTTCACTATGG -300 -290 -280 -270 -260 -250 sub ATTACTAATCCTACCTTTCCTCTTTATCCACAAAGTGTGGATAAGTT-GTGGATTGATTT hal ATGCCTATTTTGAACGTCAATTATTATCCACACGCTGTGTATAACTTTGTGG-------- ste ATAATTATGTGGATAAGATGAGTCTATCCACATTTTGTGGATAGGTT-GTGGATAGTTTT -240 -230 -220 -210 -200 -190 sub CACACAGCTTGTGTAGAAGGTTGTCCACA-AGTTGTGAAATTTGTCGAAAAGCTATTTAT hal ---ACAG-TTGTTTACGACCTTATCCACACAGGTGTGATTCGTGTTCATTCGACGTTTTT ste TTCGCAACGCGTTAATAATGTTACCCACA-GATGGTGGATTTTGTCGAAAAGCTTCTTTA -180 -170 -160 -150 -140 -130 sub CTACTATATTATATGTTTTCAACATTTAATGTGTACGAATGGTAAGCGCCATTTGCTCTT hal CTACTATATTATATTCTATCCACAT..........................TTTTCTACT ste TTTCCTTAATATGCTTTTTCCACA..........................ATTTGCTATT -120 -110 -100 -90 -80 -70 sub TTT-TTGTGTTCTATAACAGAGAAAGACGCCATTTTCTAAGAAAAGGAGGGACGTGCCGG hal ATA-TTATATTCTAT.................TTTTTAAAGAATAGGAGGGA........ ste ATTATTGTGTTTT............................................... -60 -50 -40 -30 -20 -10 sub AAG hal ... ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...