Similar regions between promoters of dnaC

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTAGCCACCTGTTTGGCCTTTTCAATAGCGGCGTCTTTAGACGTATACAAAGCTGTCGGC hal ...........................................TATACAAACGTGCCG.. ste ...GCCGTTTGTTTGGCTCGATCACGAGC..............TATACGAATGTGCCGGT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GCTACATTCTCCACCTCAATAAACCAGCCGTCCGCATCAACATTAGGTGTAATCGCATAT hal ..............CTCAATGACCCA.................................. ste G........TGCACGTCAAGGAACAA.................................. -240 -230 -220 -210 -200 -190 <<<<<<<<<<< sub TTCTTTATCATCTTTCATTCCTCCCTTATGTTTTATTGCATTTTTCCCGCCTTGTTACTG hal ............................................................ ste ............................................................ -180 -170 -160 -150 -140 -130 sub TCCGAAACGATCCAATCTGCTAACTGAAAAAAACAGGAAACAGACAATTTTTCTATTTTT hal .............AAGCCGTGAAGGGAAAAAGGTCGATAAGCGAAAAATTTT........ ste ...................CAAACGGAAAA.......AAACGGAAAAT............ -120 -110 -100 -90 -80 -70 sub TTTCTGTAGAAATGGTAGAATGGAGGTTGGAGATTTTTTAATGAGAGGACGGTGCTTAGC hal ............TGATCGAAGGGAGG.................................. ste ...CTTGACAAACGG-AAAATCGAGCTTGCTGAT.......................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...