Similar regions between promoters of dnaE

sub CATATTTTTAACCGGTTGGCAAGCTTTGTAATGGCTGTAAGCGGGGGTTCGCCTGCCAAG hal ..............................ATGACTTGCAACGGGGGTTTGCCTATTAAA ste ..............................ATGGCCGTCAGCGGCTGGCCGCCGCTCAAA -300 -290 -280 -270 -260 -250 sub TATGCTCCGAGCCCTCCGATGAGTGCGCCCCCGATCAGCACCCCTAACGCAATGAAGTAG hal TACGCTCCCATCCCCCCAATTAACGTTCCCCCAATGAGGACTCCAAAGGCGACGAAAAAA ste AACGCGCCGAGCGCGCCGATGATGGCGCCGCCAAGCAGCACGCCGACGGCGATAAAATAG -240 -230 -220 -210 -200 -190 sub CTATTGATAAAATTCACCATAAATCCTGCTTCCTGATCCATCTTTATCACCTCACCTTTT hal TCAATCACTAATGTTGCTAAGAATTCTCTGTCC--ATCG-TCCCTCTCTCCTTGTCGTAT ste CTTTGAATAAACGCCGGCAAGAAGGCTGCTTTTTCGTTCATGCGTTTCCCCGCCCTTTCT -180 -170 -160 -150 -140 -130 sub ATATCATATTGAGCTTTCAGGACAAGTATGATGATGAGTCAAAAAAGAACATTTGTTTCT hal AAATCAT.......................ATGAGGACTCCAAA................ ste TTCTC............................................CCTTTCTTTCT -120 -110 -100 -90 -80 -70 sub TTTGGAAACCGGCCTTATAATGAAGGAAGAAATGGATCGTAATGAGAAAGAGGTGATAGC hal .....................GAAGGTGGAAAGCTGACATAA-GAGAAAAAG........ ste CT.......................................................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...