Similar regions between promoters of dnaN
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGGACGTGATCATACGACCGTTATTCATGCGCATGAAAAAATTTCAAAACTGCTGGCAGA hal AGGCCGGGATCATACGACTGTCATTCATGCCCATGAAAAAATTTCAAAGCTTCTTTCAAC ste .GGACGCGATCATACAACCGTCATCCACGCCCATGAAAAAATATCAAAGCTTTTGCAAAC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGATGAACAGCTTCAGCAGCATGTAAAAGAAATTAAAGAACAGCTTAAATAGCAGGACCG hal AGACCAAGAATTACAGGATAAAATCCAAGATATTAGCGACAAGCT--------ACGCTCA ste CGATACGCAGCTGCAAAGGCATATACAAGAGATTCAAGAAAAGCTGAA------------ -240 -230 -220 -210 -200 -190 sub GGGATCAATCGGGGAAAGTGTGAATAACTTTTCGGAAGTCATACACAGTCTGTCCACATG hal TAGATTTGT-GGGGAA--TGTGAATGAATCGTTCGTACTTTTGCACAGATTATCCACATG ste -------------GCAACTGTGAACAACTGTCTCGGTTTTATGCACAGCTTATCCACATG -180 -170 -160 -150 -140 -130 sub TGGATAGGCTGTGTTTCCTGTC-TTTTTCACAACTTATCCACAAATCCACAGGCCCTACT hal TGCAAAA-CTA-GTAAAATAACGTTTTTCTCTTGTTATCCACAAACTCACAAGCCCTATT ste TGGACAGGCTGTGCTTGCTTCG-CTTTTTTTTGTTTATCCACATACTAACAAGCCATACG -120 -110 -100 -90 -80 -70 sub ATTACTTCTACTATTTTTTATAAATATATATATTAATACATTATCCGTTAGGAGGATAAA hal ACTAGTACTTCTATATTTAA-ATATAAATAGATTAATA...................... ste ACTAGTACTACGGTTTTTGTT---TTTATATTTTCATAATTTAT................ -60 -50 -40 -30 -20 -10 sub A hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...