Similar regions between promoters of fruR
>>>>>>>>>>>>>>>>>>>>>]]]]]]]]]]]]]]]]]]]]] sub GAAGCGCTGCGTTATGAGTAGCCTCATGCAACATGCATGAGGTTTTTTTAT--GTTTAGT hal .............................................TTTGAT--TATTTAT ste ................AGAAGGCACTTGCCGATGGCAAGTGTTTTTTATTTTGGTTTTGA -300 -290 -280 -270 -260 -250 sub GATTTCTACTATGAATATAAAAGACTTTTTTCATTAAAATAAGAAGAAAATGTCGTACAA hal GATT--GATTTTGACTGAAAGTGA-TTGTATACTCTAAATAAGAAG.............. ste ATGTTTTTGAATGATTTTTCTC--CTTTATTGAATGATATTGATAGAAAATG........ -240 -230 -220 -210 -200 -190 sub TTGTCCTTATTTTTGTCGAATTTACAGTTTACAAACCCTATAGACATACGTTAATATGGA hal ........AATTTTGTCGAATTT...........................TTGATTTGAA ste ............................................................ -180 -170 -160 -150 -140 -130 sub GAAACGTGAAAGATTTTGATAGTTATTGAATGAATTTGAATGATTTTAGTTGCCTAAACC hal AGAATTTTGTCGAATTTGATTATTTATGATTGATTTTGACTGAAAGTGATTG--TATACT ste ......TGAATGATATTGATAGAAAATGAATGTTTTTGATTGATTTT............. -120 -110 -100 -90 -80 -70 sub GAAAATAGCGTTTACAATGAAATTGTATTCAAAATGAATACGTTTTCATTAGGAGGTGAA hal CTAAATA..................................................... ste ...............AATGATATTG-ATAGAAAATGAATGTTTTT............... -60 -50 -40 -30 -20 -10 sub GC hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...