Similar regions between promoters of gyrA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACTTTTGAAATGCTTATGGGCGACAAGGTAGAACCGCGCCGAAACTTCATAGAAGCGAAT hal ATTTTCGAAATCTTAATGGGTGACCGCGTCGAGCCACGTCGTGATTTTATTCAAGAGAAT ste ACGTTTGAAATTTTAATGGGCGATAAAGTTGAGCCGCGCCGCCAGTTCATCGAAGAAAAT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]]] sub GCGAGATACGTTAAAAATCTTGACATCTAATCATAAAAAGCCTTATTTCCAATAAGAAAT hal GCCCGCTATGTGAAAAATCTCGACATTTAA.............................. ste GCCCGTTATGTGAAAAACTTGGACATTTAGG-ATAAAAA.....ATTTAGGATAAAAAAA -240 -230 -220 -210 -200 -190 ]]]]] sub AAGGCTTTTTTCTGAACAAGATCAGATGCAGCGATGCCTGCAATACCTATATATTCTAGC hal ......................CAGATAAGGCGAAGCCAGGAATCC....AAATTTTCGA ste GAGG....................GCTGCAAGTGAGCTTGCAAGAC.............. -180 -170 -160 -150 -140 -130 sub AAT-TTAATGTGTATAATCATAAGTTTATTGATATAATGGAGAATAGTGAAATCGTATTG hal AATCTTAATGGGT.................GATGCTATGAAGGCTGATGAAAT--TTTCG ste ................ATGAAACGTTTGAAATTTTAATGGGCGATA.............. -120 -110 -100 -90 -80 -70 sub AAGGTCATAATGGACAATCTACTCCCACATATTTCATGTGATACTTCAGGGAGGTTTTTT hal AAA-TCTTAATGG............................................... ste ...............................................AGGGAGGTTT... -60 -50 -40 -30 -20 -10 sub A hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...