Similar regions between promoters of hit
sub TGGATAGAAAATAAACATGTCCAATGCTCAAACCATTTCTCTTCACTGAATTGATGAATT hal ...........TGAATATCTCCCATCATCAA..............CTGAATATCTCCCAT ste ............................................................ -300 -290 -280 -270 -260 -250 sub CTTCATGTATGAAGCAAATTGT----CAAATGAGGTGTTTATCGCAGGAATCGTTAGGCA hal CATCAAGGAATGGTCAACTTGT----GAA..................GCATCTTTAAGCA ste ..........GAACCAACTTTTGCTGCAAATGGGGTGTTCATC................. -240 -230 -220 -210 -200 -190 sub TTAAA-CAAGTCTTCATTTTATTGACAAATGAGGTGCTTACCAAAGGCATAACACATTTT hal TTATAGCACGTC....................GATACTGAAGGACGACTTGAAACCTTTT ste ................TTTTGCTG-CAAATGGGGTGTTCATCAAACGCA-----CATTTG -180 -170 -160 -150 -140 -130 sub CTTCATATAAGCTCTTCCTCTGCATTCAGGGTGAACGCTCGCCGTTCATCCTGTTTTCTA hal CCTTCTAT......................GTGACCGCTCGTC.......CTTTTTTCTA ste CTTGAATCATCCTCTCCC.......................................... -120 -110 -100 -90 -80 -70 sub TTTTCTGCATTTCTGTGGTACGATGAATGTATACATACTAAACAATTTCATAAGGAGGAA hal GCATCT...................................................... ste .........TTTTTATGGTAAAATGAA................................. -60 -50 -40 -30 -20 -10 sub CCCTC hal ..... ste ..... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...