Similar regions between promoters of msmR
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CGTAATGTCTCAACACTGATTGGCCTCCGATCAGGCAAATCACCAAGCAATCGAAACAGT hal ............................................................ ste ..........................CCTATCCGG-ACATCACGAAGGA........... -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<< sub TGCTTTCTTCTTTCGGCTCTCATCCCATCACCCTTCCTTATTCGCTTACTTCACATTTAC hal ............................................................ ste .....................................................CATTTAC -240 -230 -220 -210 -200 -190 sub GAGACAGATCTGGGTTCCCCTTTATTTTTCCAACATAAATCACATCATTTACTAAATATT hal ............................................................ ste TCGGCCTATCCGG................................CATTTACT....... -180 -170 -160 -150 -140 -130 sub TAGTAAATATTATGGAATATTTCGAAAACAATTATTGTAACCGCTTACTTTTATATGATA hal ....AAAGTTTATTAATTAATTTTAAAAACACTATTGAAAACGCTTACCCT-ATATGGTA ste ...TAAACATTG-GGATTGGTGCGAAGCCATTTACT............TTTCATATGAAA -120 -110 -100 -90 -80 -70 sub -ATATC-AATTTATCAAAAACAGATGAGTTAATATTTTACTAAATAGATGAGAGGGATAC hal -GGATT-TCATTAAGTAAAA--GTTTAGTTAATAATCTGATAATT............... ste CATAAGGAAGGGATCGCAAACAGA.................AAAAAGAAGACTGGGA... -60 -50 -40 -30 -20 -10 sub CC hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...