Similar regions between promoters of murC
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGCAAGCCTCGAGAGGTGCTGATCACAGCAAGTGATTTAATAAACGAATAATATGGGTTC hal ........TCGATTGGTGTTAAGGTTAAAGTTTGTTATAATAATTCAATAAT........ ste AGCAAACCGCGCGATGTGTTGATGA......GTGCTATAATGAGGAAATGAAATGGAT.. -300 -290 -280 -270 -260 -250 sub ATTTTCACACCAAACATGGTATGATAGTGTTTAGAGCATTTAACAGCTATGCCGCTTTAC hal ....................ATTATATTGTATCAAGGAT..........TGCCGCTTTGC ste ......................GGTAGTGTTTTG.......................... -240 -230 -220 -210 -200 -190 sub AGCAGCTGTGCATAGACAAATCTTGATATCTGGGTTTAATCGGAAAGAAATAACCTGATA hal GACAG..................TGATGTGTGG---TACTGGAAAAGAA........... ste ............................................................ -180 -170 -160 -150 -140 -130 sub CTAAACATAACAAAACATATAAAATACGCCGCTAAGGGAGGCTTTTCAGCCGCCGCGGTC hal ............................................................ ste ..........................................................TG -120 -110 -100 -90 -80 -70 sub GCAAATTGAAATGAGCGTCATATACTGGGGAACAGATAGACGTTTGTTGGAGGTACAATT hal GTATATTGAATTGAT-----TATATTGTATCAAGGATAAATGTTT............... ste GCAAAACGAGATGGATATCATATACTGTCTTACAGAGAGACGATGGTTGGAGG....... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...