Similar regions between promoters of nusG
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTAAAGGAAAAGAGTTAACGCGTTATACCATTACGGTAATTTCAACAGTTATCTTTTTTG hal ......GTAAGGAGCTTACTCGCTATACACTTGTTGTATTAGGGACTGTAGCGTTCATTA ste CAAACCGGAAGGAGTTAGTGAACTACACGGCGGTCGTGTTGGCCACGGTGGCGTTTTTCA -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTATCTTTTTTGCCCTCCTTGACACAGGAATTTCTCAATTAATTCGTTTAATAGTTGAAT hal CGGTATTCTTTGCCGTTGTTGATTATGGAATTTCCGCCCTCGTACGTGGATTGATTGAAT ste CCGTCTTTTTTGCCGTTGTGGACCTCGGCATTTCTGAGTTGATTCGCCTCGTGTTTGAAT -240 -230 -220 -210 -200 -190 >> ]]]]]]]]]]] sub AATGATCAGCAATACGTGCTATAATAGATCATAATATTACTTGCCAAAACCCGTTCAGCG hal AATG........................................................ ste AAGCGGACGAAGGATATGTTATAATGAAAGATAATCGTGCGCGTATGGAACCCGGCAACG -180 -170 -160 -150 -140 -130 ]] sub GGTTTTTTATTGTGGCTTAAAATGAAAGTTATCATAGGCTTGCCGCCTATTTTTTGAAGC hal .GTTGTTGATTATGG............................................. ste GGTTTTTGTTTTGCGCAAAAAACAAAA.............................ACGG -120 -110 -100 -90 -80 -70 sub GTTATGGTAATTCACTAAAACCAAATGCGGGGAGGGAAGGAC-TGGACAGTCCTGAATAG hal .TTATGGAATTTC...............GAGGAGGGAAGGACATAAACCGTCCT...... ste GTTTTTGTTTTGCGCAAAAAACAAA................................... -60 -50 -40 -30 -20 -10 sub A hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...