Similar regions between promoters of pabB
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCATCTCATCAGGTGCGGCAATTTATGCTGCTCTTCAAGTAGCAAAAAAACTCGGAAAAG hal .CATTTGACTAAGAACCGCAATTTAAG..................AGACATTCGGGGTAG ste GCATTTCGTCCGGCGCTGCGATTCATGCGGCATTGAAAGTGGCGAAAGAGCTCGGCAAAG -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCAAAAAAGTATTGGCCATCATTCCAAGTAACGGCGAACGTTATCTAAGCACGCCGCTGT hal GATAAGAGGGTCTCGCCCTC---CTATGCCACCCCAACATTTGACTAAGAACCGCAATTT ste GGAAAAAAGTGCTCGCCATCATCCCGAGCAACGGCGAACGTTATTTGAGCACGCCTCTTT -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]] sub ACCAATTCGATTAAAAAAAGCCAAAACTCCCGGTTCGCCGGGAGTTTTTTTATATTTCGT hal AAGAAATCGATAAAGGAAGG........................................ ste ACCAATTTGA...............................GAATTTTTTTA........ -180 -170 -160 -150 -140 -130 sub GCATCAAATATGCCATGTCTGCGACGAATGTTATTCTTGGAAGAGAAATTCACTTTTTTC hal ...........................ATGTTTTTCT---AAGCACTATTCGTTTTTGCC ste .....................CGGCGAACGTTATT......................... -120 -110 -100 -90 -80 -70 sub ACTAAC---AACATTGCTTTACAATTAAAAACAAGTAAAAAAGAAAATAGAGGAATGATA hal AACGTCTTCAACTTTCCTCATCTATGCAGTTCATGTAAAATAGAGA.............. ste ...........................AATAAAAGTAACTATGGACATCG.......... -60 -50 -40 -30 -20 -10 sub CAA hal ... ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...