Similar regions between promoters of pnpA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAGACCACCACTCACGTCGCGGTCTTCTTAAAATGGTAGGTAAGCGTCGTAATCTTCTTA hal AGGATCACCATTCACGCCGTGGTCTTCTTAAAATGGTAGGTCAACGTCGTAACTTGTTAA ste AAGACCATCATTCACGGCGCGGCTTGCTGAAAATGGTCGGGAAGCGCCGCAACTTATTGG -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGTATCTGCGTAATAAAGACGTAACTCGTTACCGTGAGTTAATTAACAAACTAGGCTTAC hal CGTATTTGCGTAACAAGGATGTTACTCGTTATCGTAACCTTGTTGATAAGCTTGGCCTAC ste CCTACTTGCGCAAGAAAGATGTGGCGCGCTACCGTGAATTGATTGAGAAACTTGGATTAC -240 -230 -220 -210 -200 -190 >>>>>>>> ]]]]]]]]]]]]]]]] sub GTCGATAATCGT---AAAAAGCGGGAGGATTCCCGCTTTTTTA-TCGTATTAAAGCGAAA hal GTCGATAATGAAGAGAAAAAGCGGGAGATTTCCCGCTTTTTTC-T............... ste GTCGATAA--------AAAAGCGGGAGCATTCCCGCTTTTTTGCTAGTTTATAGGCGTGA -180 -170 -160 -150 -140 -130 sub TTTCTTATAACAAATCATTGAAATCCTTTTACATACTACTTTGACATTGATATGTTCAAT hal ............................................................ ste TT.......................................................... -120 -110 -100 -90 -80 -70 sub TCATTTCGTTCATAATAGGAGTAATTGATTATTTCA-CACAACGAAGAGAGGAGTTCGTA hal .............AATAATAAAAAAAGATTGTTTAA-TTTACGTGCGAGAGGAGTACGT. ste .CAATTCGTCTATACTA......ATCTATAATTTCATCTGTACATAGAGAGGAGTAC... -60 -50 -40 -30 -20 -10 sub ATTGT hal ..... ste ..... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...