Similar regions between promoters of prkA
sub TTATTCTTTTCCAGGCTTGCTTTCGTATCCTGCGGTAAAAATTGATACTAAAAAAGTGAC hal ......................TCGTATCC.............................. ste ..........CCTGGTTTGTCTTCATAGCCAGCGGTGAAAATGGCCGTCAAAAAGGCAAT -300 -290 -280 -270 -260 -250 sub AATGACACCCATCATGATGATTGTTTTCACCGTCTCTCCCCCTCTTCAATTTTTCCGTGC hal ............................................TTGAATTAATCGCTCT ste GATAACCCCTAGCACAAGCAAAGTGCGCATCGTTTGTTCCTC-CTTCA............ -240 -230 -220 -210 -200 -190 sub TGTCCGAGTCTGGATGATTCTGTATTTTTCTTTATTATGAACGGTCGCAGTCTGCCTTGT hal TGACCACGGATGGAGGTT..TGAATTAATCGCTCTTGACCACGGATGGAGGTTGACCTG. ste ...........................TCCTTCATAATGAAAG-TGGCAGGC........ -180 -170 -160 -150 -140 -130 sub CAACGATGTATGAGTATCTTTATTTTTAAGAAACCAAAGCATGTATCACGAGATGGCGGC hal ........................TTGACGAAATGAAAGC..................GC ste ......................TTGTTAGGAGACAAAAGAATGATACGGGACATCCTCGC -120 -110 -100 -90 -80 -70 sub ATAGATTGTATCAAAGTACCTTATTTGCATAGTGTATCAAACATGATAGAGGAGGTCCTT hal ATAGATTGAATTAA...............TAGTCCAGCAAACA................. ste ATAAATTGTAATAA.......................CATCCAAGGGTGAGGAGGTCCTT -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...