Similar regions between promoters of pta
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CCGCTTCATTCGTCATTTGCTGTTCACTCATTTATCTTCACTCCCATTATCTTTTCATGA hal ...................................................TTGTCAT-A ste CCGCTTCGCTCATCAT......TTCGCTCATC-ATCGTCACTCC--TTATCAACAAATTG -300 -290 -280 -270 -260 -250 sub TTGCCT-TCACTATACCATAGTTTATCCGATTCTACTGTGGAGAAACCTTGAACATCCCT hal CTTCAT-ACACGCTCCTTTTGTTTTTGCACACGTACTGTCTAGA................ ste TACAGTATCACTATATCACAGTTTGCCCAA.............................. -240 -230 -220 -210 -200 -190 sub TCCGTATAACTCCATCAAAATAGAAGAACCTATAAGGGAAGATTGAGTCACTTAAATTAG hal ............................................................ ste .............ATCAAAGTGGAAGTA......AAGGAGGATTGGATC........... -180 -170 -160 -150 -140 -130 sub TTAGAAAAATAAGATTTTTTTATGAAAGCGCTATAATGAAAGTTGGCTGTTTGAATTTGA hal ....AAAAATAAAACTTT------AAAGAACTTTAACCGAA-----CGGTTTATTTTTTA ste .........................AAGCGGTATGCTTAATAGTGG.............A -120 -110 -100 -90 -80 -70 sub TTGGAAGAAGAGT--ATGCTAGTAAAAGAAAGCGTTTTTGTAACTTTTTGAGGAGGTTTT hal TAAAAAGAGGAGT--ATGCT........................................ ste GTGGAAGTAGACTGAATTGTGGCAAAAGGTGAATTATTTGT................... -60 -50 -40 -30 -20 -10 sub ATT hal ... ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...