Similar regions between promoters of ptsG
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AACCAGTTCATGAGGCGGAAGCGGTTTATCTGACGCTTCATCTGATACCGATTAACCAAT hal AAGCGATTCCAGATGCTGAAGCCGTTTATTTAACCTTACACCTTC-AGCGTCTTGCAAAA ste ..................AGGCGGTCTATTTGACGTTGCATTTGCAACGGCTGGCGGAGA -300 -290 -280 -270 -260 -250 >> sub AAAATTTCAT---AAATTCA--GTTTATC-CTTATAACGTGTTACTGATTCGATCAGGCA hal GAA------T---AACTGGC--ATTTTTC-TTTC---CGTGTTACTGGTTATG-CAGGCA ste AAAAGAACAATACAACTGCATAGGTTGTCTCGCTTTACGTGTTACTGACTCGATCAGGCA -240 -230 -220 -210 -200 -190 sub TCAGTGATTG-----------------AGGGAAAAAAACGGGAAGTTCATTCTCGTTCTT hal TGAGAGAAAGGAAAAGGTGCAGACTATAGAGATAAGGAGGAGACTCCTATCTTTATGGCT ste TGAGTAAA-G-----------------AGGGCAAACAAGGCG...........CGTTCTT -180 -170 -160 -150 sub TTGCGCACCCAATTTTGCTCATGCCTTTTTGTTGTGTAAA-AGGGCAAATGTAAACGGTT hal GTGTCTTCCCCCTTTCCCTCATGCCTTTTTGTTGTGTGA..................... ste TTTGTCTCTC---TTTAGTCATGCCTTTTT..TGAGTAAAGAGGGCAAA........... -140 -130 -120 -110 -100 -90 sub AAACTGGAAGACTTACGCCTGTGAATTCGTTGTCATGATTTTTAGCTGTAAGG--T-CAG hal .........................TTTGTTGTG-TGATTTTTTTCGGTAAGG--TGCAG ste ....................................GGTTGTTTGCTGTAAAACTT-AAG -80 -70 -60 -50 -40 -30 sub ACTAGTAAAA-AGAGGAGGTCAATTCTT hal ACTATAGAGA-TAAGGAGGAGACTCCT. ste AAAAGGAAACTAAAGGAGGTTA...... -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...