Similar regions between promoters of qcrA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTGACGAAAGTTGGAGAGCTGAGGATGCGTTAGGCAAAATGATTGTTACATCGTCTGTTC hal ...................TGAGTATGTCCTAGTATGAATGTGTCTTACTT-GTCCGTT. ste ...................................................CGGTTGTTC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CATTAGAGCATTTAAATGACTCTTTAAAAAGAAAAATATTGGATGAACGCACTGCTGAAA hal ............................................................ ste CGCTCGAGAGCATGGGTGAATCGTACAA........................TGCGGCAA -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTTAAACGTTTTGTTACAGTTATGGAGCACTTTATAAAAACACTTACATTTCCTTATAA hal ............................................................ ste AGTCCGACGTTTTG.TCCAGCAATTGAGCTATCATTAGAATGTCCTAGTTTTCCATAT.. -180 -170 -160 -150 -140 -130 sub ACAATATTTTGGCTATATTGACCTTGCTGAGAGATTCATATATTATGAGGGTGTCTAGAG hal ......TTTTTGTAATATTGA...................TAGTATGAATGTGTCT...G ste ...........GCGATATTGACCTTGTCCAGCAATTGAGCTATCATTAGAATGTCCT-AG -120 -110 -100 -90 -80 -70 sub TTATTGCAATATTTTCTATTT----TAGTCAGTTTGCAGGGGTGACTTAG---AGGGGGG hal TTTTTGTAATATTGAGTATGT.....................TGACAAAG---AAGTGGC ste TTTTCCATATGTGTTATACATACAATCGTCCGGT-GCGGACTTGATTTTGCATAGAGGGG -60 -50 -40 -30 -20 -10 sub AGAAGAG hal AAAA... ste GGAAGA. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...