Similar regions between promoters of resD
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTGGGCTCAGCTCGCGTGGACCAGATTTTGGGGCTGGGACCCTAAGGAAGTATGGGCGCT hal .......................GTTTCTGGGGTTGGGACCCGAAGGAAGTATGGGCATT ste ...............................GGCTGGGACCCGAAAGAAGTATGGGCGCT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GATCACATTTTTGTTCTATGCCGCTTACTTGCATTTAAGACTGTCAAGAGGCTGGCACGG hal AATTACGTTTTTGTTCTATGCAGCCTACTTGCATTTACGTTTGTCAAAAGGTTGGCATGG ste TATCACTTGGCTGTTTTACGCTGCCTTTTTGCACCTTCGTTTGTCAAAAGGCTGGCATGG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGAGAAGTCAGCATGGCTGGCCGTAATCGGTTTTGCTATTATTATGTTTAATTTAATATT hal AGAGCGTTCCGCTTGGTTGTGTGTTATCGGATTCGCGATCATTATGTTTAACTTAGTGTT ste TGAAAAGTCGGCATGGCTCGCCGTCATCGGCTTTGCCATTATTATGTTTAACTTAGTGGC -180 -170 -160 -150 -140 -130 @@@@@@@@ >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >> sub CGTAAATCTTGTGCTTGCCGGACTTCATTCTTATGCAT-AGTCCTTTGAAAGCGACACAG hal TGTCAATCTTGTCATTGCAGGCCTGCACTCTTACGCAGGAGGCATGTAAAGGCGACCC.. ste GGTCAACCTCGTCATTGCGGGATTGCACTCGTACGC........................ -120 -110 -100 -90 -80 -70 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ sub TTCTCAAACTTTCTCACGATTTGATAAAATGAAAGTAACAGAAGGAAAGCAGGGGGAAAA hal ...................TTTTCAAAAAGGTATGTTACA.AAACAAAGGCGGGGG.... ste ......................................CAAAAGGCTGGCATGGTGAAAA -60 -50 -40 -30 -20 -10 @ sub C hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...