Similar regions between promoters of rho
sub AGGTAAAAATAAAGAGTGCTGCGAATTTTACTGCGTAATACCTTCTTTTAAGCACTAGGA hal .GGTTAAAATAGAGGGTG..........................CTTTTAAGAACCA... ste .......AAAAATAAGCTCTGCCA-TTCTACTTCTTTAT---TTCATTTCAGCAATAGGA -300 -290 -280 -270 -260 -250 sub AAGTTTCAATTTCTACCGCATACAGACGATATAAGTATTGATCTTCT-CATGTTTTTGTC hal ..........................................CTTCT-TCCGTTATTTTG ste AAATTT......................AAATAAGCTCTGCCATTCTACTTCTTTATTTC -240 -230 -220 -210 -200 -190 sub CTCGCTTCCTTCAAAACTCATTAAGACAATCCTTTTAACAAAAGCGCCGATCATGGGTGG hal ATTGCTTCC........TCATACATTCATAACTTTTAAGAA................... ste ATTTCAGCCTTCATCATCTTCGAAATGAATCCCTT......................... -180 -170 -160 -150 -140 -130 sub AAGTGTTACCGATAGAAGTTCCTTTATGTTAAAAAAAGAATGTGCTTTGGCGGATGTTGT hal .......................TTATGGTTAAAATAGAGGGTG................ ste ..............................AAAAAAATATTG..............TTGT -120 -110 -100 -90 -80 -70 sub GCAAAAGCAGCAGATGACATGTTCAGAGTAAGATATTGACTATGAAAAGCGTGGTGTTTT hal ..............................ACATATTTTAAACGAAAA--GTGGTGT... ste GCAAAA................................AATTTGCAAAGTGTGGTGT... -60 -50 -40 -30 -20 -10 sub T hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...