Similar regions between promoters of ripX
sub TAAAACCTTTCTGATTTGGCATATGGTTTATATAACTGGAACCATAGGGAAAGGATCGAT hal ................................................GCAAGGGGCCAG ste ..............TTTGGCAAATGGT................................. -300 -290 -280 -270 -260 -250 sub TAGGACATGGGAAGATTCC-TGAAAACAGCTGTCGATGCATTGAAAGTTTTCATCCTGTT hal AAGGACAAGGAA.........................GCGTTTATTGTTTTTTTACCGTT ste ........GGGAGGATGCCATGAAAACCGTTTGGCAAATGGTGAAAGTGTTTCTTTTATT -240 -230 -220 -210 -200 -190 sub TACCGGTTTTACCGCTTTGTTCTATTATGCTATGATATGGGTGAATCAAGAGTATGAAAA hal T.....TTTTACCGTTTCGGTGAATAA................................. ste TACGGGATGCACCATTTTATTTTATTATAGTCTTGTATGGTTTAACCGCGAGTACGAGTA -180 -170 -160 -150 -140 -130 sub CTATCATCGGTATGATAAACCGGAAGC-TCCGCTGTAAAAGTTGTTGAAATGGATCAGGA hal .........................GT-TTCGGTGAATAACTTGTTCAGA.......... ste TTACCACCGATACGATGAGCCGAAGGGATCGGCGGTCAAAGTATCGGC---GGCGGAGAG -120 -110 -100 -90 -80 -70 sub TGAAAAAGGCGGATGGTTCGACCGGTTGATCTTTTTTTACCAAAACGGGGAGTAGATCAA hal .................TAGAGCGTTTATTGTTTTTTTACCGTTTCGGTGAATA...... ste TGCGCCGCCAAGTTGGCTCGACCGGCTGTTATTTTTTTATCGCGATGGGGAGTAGA.... -60 -50 -40 -30 -20 -10 sub GA hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...