Similar regions between promoters of rplM
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACTTTGCTTGATGCAGGTATTGGAAAAATTTCTCCCGATGAGGTGAAATCCATGCTGGAA hal ...................................................ATATTGGCA ste .................TATGGCATGTATTTTCCACGATTAG.................. -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCGAAGGATCGCGAAGCGGCAGAGCGCACAGCGCCGGGGCACGGGCTATATTTATGGAAC hal GCACGGAGCCGAGAAGCAGCTGGGAAAACAGCACCAGGCCACGGATTG-ATCTCTGGTCG ste ......GACCGTGAATTGGCGGATGGC................................. -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>> > sub GTTTACTATGACAACTA--AACCAGGTGTATAATATTTCTTTGACAGAGTCTG--CATAA hal GTCGAATATGACGAATGGCAAGCTGGAAAATAATAAAACAACGAATCCGTGTG--TAACA ste .TTTTCTAAGACAACGA--GTCC--TTGTGTAACATTTTCTTGACATTGGCGCGCCGGCA -180 -170 -160 -150 -140 -130 sub AGTTATAAGATAACATATGGTATGTATTTCAACCCCACGATAAGCCCCGGAACTTATTGT hal AAATAT.............GTGTTTATTTGAAC..................ACTTTGTGT ste AGCTATT--ATATCATATGGCATGTATTT----TCCACGATTAGCCCCGGACCATAATC- -120 -110 -100 -90 -80 -70 sub GTTGTGAAATAGAACGTAATCGAAGTTTATTGAAAATGACAGATCATTTAGGAGGGGAAA hal GTTCATTCATATATGATGGTAGATGGTAATT............TAATTTAGGAGGG-ACA ste GTGTTGAAATAAA.................................TTTAGGAGGGAA.. -60 -50 -40 -30 -20 -10 sub TTCA hal TTC. ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...