Similar regions between promoters of rpoB
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>> sub TTCCGTCGTTCAAAAAAAGAAAGGCTATTATATCATAAAAGCAAAAA--AAGTTTGACTC hal ...............AAGGGAAGCCAGTGATCTGACAAATGGCAAAAGCATGTTTTTATA ste ............................................................ -300 -290 -280 -270 -260 -250 sub GGTATTTTAACTATGTTAATATTGTAAAATGCCAATGTATATATTTTGCTTGATATGATG hal GCTCCTGTA-CTTTTTTAAAAA-GAAGACTACTGATTCAGTGAGTCTGATTTTTAGGAGG ste ...............................CTAATGTCTACATTT.............. -240 -230 -220 -210 -200 -190 sub AATTGTCAATATCTATGTATAAATTATACAAGTATGGAAATGCTAATAAAATCGGTATTT hal AA...........................................ATAAAACCATTTTTT ste ............................................AATAGAAACCATTTTC -180 -170 -160 -150 -140 -130 sub GTTTTTGGATGTGGTTTTCTTA---ATTAGAAACCCTTTTTTCTTTTGTCTTGTAAAAGT hal CTTTTTG.......................AAACCATTTTTTCTTTT............. ste TTTTTT..ATATGGTTTTCTATTGGAATAGAAACCATTTTCTTTTTT............. -120 -110 -100 -90 -80 -70 sub ATTTTCTTTCTTTGGAAGAAATGCTTATTACACATATAATACGCATGATTTGAGGGGTGA hal ...TTGTTTCTTTTGAACATCCTCT-ATTAC---TATAA--CGCGAGATTTGAGGGGTGA ste ...............................................ATTTGAGGGGTGA -60 -50 -40 -30 -20 -10 sub ATCAG hal ATCAG ste ATCA. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...