Similar regions between promoters of rpsP
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATGACTGTTCTTGAAAAAGAACAGCCGGATATTATCAATGCCAGCCGGCGGAAGCGGATT hal ............GAGAAACAAGATCCTAGCATCATTAATGCGAGTCGTCGTCGACGGATC ste ............GAGAAAACGCATCCGGAAATCATCAACGCTAGCCGCAAAAAGCGGATC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCAAAAGGAAGCGGGACATCCGTACAGGAAGTCAACCGTCTGCTTAAGCAGTTTGATGAA hal GCGAAAGGAAGCGGGACGGCGATTCAAGATGTCAACCGGCTGTTAAAGCAGTTTGAAGAG ste GCCAAAGGAAGCGGCACGACGGTGCAGGAAGTGAACCGGCTTTTGAAGCAATTTGACGAG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>> sub ATGAAAAAAATGATGAAGCAGATGACAAACATGTCA---AAAGGCAAGAAAAAAGGGTTT hal ATGAAAAAGATGATGAAGCAAATGACGAACATGGCAGGCAAAGCCAAGAAGAAAGGG... ste ATGAAAAAAATGATGAAAATGATGACGAATATGCCA---AAAGGGAAAAAGAAAGGATTC -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]] ]]]]]] sub AAGCTACCTTTTATGTAATCGGTTATACATGATA---AAACCGTTGTTAAGAAAAAACAC hal ......CCTTTTCTCTAGTTTTTCTTGAATGCTAGCGAAAAAGATGTTATTATAAAAAAT ste CGTTTTCCATTTATGTAA----------ATGA-----AGATC--TGTTAAGCGAAAAACC -120 -110 -100 -90 -80 -70 sub TTTACAAACACTTTTATCATTGTTAATATACTATCTTGT-TGAAATATTTTCGGAGGTGC hal TGT.................TGTTATTATAAAAAATTGTGTGAAATGATTTTGGAGGTG. ste TTTACAAACGGAAAAAGAATTGTTAATATACTATCTTGTGTGAACTCTATACGGAGGTGC -60 -50 -40 -30 -20 -10 sub TAGTAAA hal ....... ste ....... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...