Similar regions between promoters of sapB
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTGTCGGGGCTGCGACCGTGTTGATCTGGATTACAACCGGCCTGGCAAAATCAACCGGTG hal ............................................................ ste .....GCGCCTGCGACCATTT..................GCCGGGCGAAAACAGGCG... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGTACGAAATCATCCCTGGGTTTATTCTCAGTATGATTGCCGGCATCATTGTCAGCATGA hal .....GAAATCATC.............................................. ste .................................TGCTTGGCGGCTTCATT.......... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCACAAAACGTCCTGCAAAAGCCTCTTACCGATTATTCGGTGTCATGGAAAAGCTGTTAA hal ....AAAACGTCC.............................................AA ste ............CAGCATAAGCCTTT.................................. -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]]]]] sub AACGCAAAAAGTAAGCAATAAGCCATCAAGCGCAGCTTGGTGGCTTTTGTGCTCTTGTTT hal AACGTCCAAAGACGCCAATGGGTCAACA............TAGCTTTTGTG......TTT ste .................ATAAGCCTTTATGGT--GCTTGGCGGCTT.TTTTCTTTCATTA -120 -110 -100 -90 -80 -70 sub TGCTATAAATACTGTGAGAAAATCATATTTATTTAAAAACACCATAGAGAAGGGGGAAGT hal TGCTATAAA................................................... ste TACCATGAACGAGGTGAGAA.......TTTCTTTCATTATACCATGAACGAGGTG..... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...