Similar regions between promoters of spo0A
>>>>>>>>>>>>>>>>>>>>>>>>>]]]]]]]]]]]]]]]]]]] sub TTATGGAAAAGAAAAAGCAAGCTGACTGCCGGAGTTTCCGGCAGTTTTTTTATTTTGATC hal .TATGATAAGGATAAAGAAA........................TTTTTTAATTTT.... ste ..........................................AATTTTTATTTTTTGA.. -300 -290 -280 -270 -260 -250 @@@@@@@@@@@@ sub CCTCTTCACTTCTCAGAATACATACGGTAAAATATACAAAAGAAG-ATTTTTCGACAAAT hal ..........................................AAG-AAAATTCGACAAAA ste .................AAACATCCGTTAAAATGAAATTTGTAAGGATTTTTCGACAAAC -240 -230 -220 -210 -200 -190 @@@ @@ @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ sub TCACGTT-TCCTTGTTTGTCAAA--TTTCATTTTTAGTCGAAAAACAGAGAAAAACATAG hal GGAATAAATTCTTTGTAGTCAAA--TGGCGAATCATATCGAAAACAAGAGTAAAACGAAG ste GCA.....TCGTTTTTTGTTATAATTTTTATTTTTTGAAAAATAAAAG............ -180 -170 -160 -150 -140 -130 sub AATAACAAAGATATGCCACTAATATTGGTGATTATGATTTTTTTAGAGGGTATATAGCGG hal GAAATAAAAGAAAT--------TATGGGATTTTTTAATTTTTTTAAAATTTGAAGAGGGA ste ..........................................TAAAAGGATTTTTTGCCG -120 -110 -100 -90 -80 -70 @ @@ @@@@@@@@@ @@ sub TT-TT--GTCGAATGT--AAACATGTAG--CAAGGGTGAATCCTGTTAACTACATTTGGG hal TT-CTAGGCCGAATGTCGAAAAGTTTATGACAAGGAAGTATCTTAGTAACT......... ste CTGTT--GTCGAATGT--A......................................... -60 -50 -40 -30 -20 sub GAGGAAGAAAC hal ........... ste ........... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...