Similar regions between promoters of spoIIE
}}}}}}}}}}}}}}}}}}}} }}}}}}}}}}}}}}}}}}}}}}}}}}}} sub GATCCCCTCCGCCGCTACCATATTTGTT---TGGCCCGTTGGTCAAGCGGTTAAGACACC hal ............................................................ ste .ATCCCCTCCACCGCCACCAACAATCAAAAATGGCCCGTTGGTCAAGTGGTTAAGACACC -300 -290 -280 -270 -260 -250 }}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}} ]]]]] sub GCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCATC-CTAACAAATCGGT hal ............................................................ ste GCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCATCGCAAACGAGCATGC -240 -230 -220 -210 -200 -190 @@@@@@@ @@@@@@ ]]] ]]]]]] ]]]]]]]]] sub TTC-TCTTGC-AGAAGCCGATTTTTTTCATTTTTAGACAACATTCCGGAAATTCTTTTCA hal ........................TTTCCCATTTTGACAAAAT................. ste GCCATCAAGCGACATGCTCGTTTTTCTTTTTTGTCTCTTTCTGTCGGAACAAGCCTGT-- -180 -170 -160 -150 -140 -130 @@@@@@@@@@@ @@@@@@@@@@@@@@@@@ @@@@@@@@@@@ sub TAAACGAATATCAAGGCAGAAACCGTCGAAGATTTCTTTGGTATTGTTACCTTCTTTTGA hal .........ATGGAGCCGAAATGAGTCGAACATTTCTTTGTTTTCACTTTCCCATTTTGA ste TGACCGCGTTTTGCCGTGGAAAACGTCGAACGATTTTTTATTTTTCTCTG-TGGTTTTGA -120 -110 -100 -90 -80 -70 @@@@@@@@@@ sub CAAAATCCTATCTGTGCTTTCGCTATAATGACAGGCAACGAATATAACA--GGTGGGAGA hal CAAAATCTTTCTTTTGGACATGTTTTAATGG-AGTCA-CGATCTTAAAATGGGTGGTGGA ste CAAATTTCTGACAATTCAAGCTATATAAT.........................GGTAAA -60 -50 -40 -30 -20 -10 sub TGAGAGGA hal TGATA... ste GGAGAGGA -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...