Similar regions between promoters of treA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGAATCTGCGATACAGATTCCCGTTTATCATTGCAATGGTCAGCTCTGGCCTGGCCGGAA hal ...................CCCGTTTAGC........GTTTAGCTGAAGCCTTGCCCG.. ste .GAAAGTGCG-TAAAGCCGCCCGCTCATGATTGCCGTG...................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGTATATTTCTTCTCAAGGTGTGCTGGCAAGCTCCGTCGGTGTCGGCGGCGTGCCGGGGA hal .............................AGCTGAAGCCTTGCCCGCGGCAAGCAAGTGG ste ................................TCGATCGGTGTCGGCGGCCTGCCGGGTT -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTTCTCAATCATGAGCCAGTACTGGGGCGCGTTTGCAATCGGGATGGCTATTGTATTGA hal TTTTTGAAACAATCAGAC.........................GATCACTATTGAGGTGA ste TCTTGTCGATCGTACCGCAAAAGTGGACGCCGTTCTTTATCGGCATGGCGATCGCGATTG -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCGTGCCGTTTGCCGGAACATACGCGTATGCGAGATTCAAACATAAATAACAAGTGGGGA hal T.....................................AAACATAACCTAAGAGTGG... ste TGGTGCCGTTTGCGCTGACGTTTGTCTTTGGGAAAGT.....................GA -120 -110 -100 -90 -80 -70 sub GCGGGACGTGTTGAACGTTCCCTTTTCCCGTTTTCAATTTAAATATGGTGGTGGAAACAG hal .............................GTTTACAATATAAAAAAG............. ste GAACGATGTGCGAAATCATCCATTTACCACCATACCATT..................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...