Similar regions between promoters of trpS

sub TGATTTATAATGAAGCAATCAAAAGAAAAGCTTGCTATGAAAAAGAGTAGTACACGTTTC hal ..........................AAAGCTTCAAATGTATCAG.............TC ste ................AATCTAGGATCAACCGAGCGATGAGAAAGAAGAGTACATATTGG -300 -290 -280 -270 -260 -250 sub ACCTGTTTGAAGAGAGTCTGCGGT-GCTGGGAGCAGATAACGGGCAATGTGGAATGGACT hal ATCTATCTGAAAGGA............................................. ste CGATGCCTTCAGAGAGCTTGTGGACGGTGCGAACAAGCGGCTAGCCATATGGAATGGGCT -240 -230 -220 -210 -200 -190 sub TTGGAGCAGCTGACCGAACTGGAAAAA-AGTAGGCTCAGCCGGAGCAGTCTCCGTTACA- hal ......CAGCTGAACGA........................................... ste TTCGAGCTTCCCGCCGAACCGGCGACGCAGTAGGCGAGGACGTTTCC--CCGCGTTACAG -180 -170 -160 -150 -140 -130 sub -----------------AACGTCAGAGTGATTCCATTTTAATGG--AATAATCAGGGTGG hal ..............................................AAAACTTACGGTGG ste GGGGCCATGCGCTAAGCATGGGCTGAGCGATTGCGCTTGTCGGCGCAATAAGTAGGGTGG -120 -110 -100 -90 sub TACCACGGTTCATTCGTCCCTTTTTTACAGGGGAAGAATGAGCCTTTTTTATTATGT--T hal CTCCAC........CATACCTTTTTT..............ACCTTTTTTTATTTTAG--T ste CACCGCGGTCCTACCGTCCCTAT--CAGAGGGCTGGCAGG-GCCTTTTTTATTTTTTGCT -80 -70 -60 -50 -40 -30 sub TTAAGAAATGAGGTTGATGTTTTC hal T....................... ste TGAGGGAGTGAAGAT......... -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...