Similar regions between promoters of uvrB
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTCTTATTTAAAAGGCTATACAGAAACGTATTTTATTGTAGGATTGGATGTTGTGTCTCT hal ............................................................ ste .......................AACCGTCTGTTTTTGGA...............TTTCT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGTGGCTGGCGGACTGTATATGGCCAAAAAAGCTGCAGAGAAAAAAGAAGAATAAATCGG hal ..........................................................GA ste TTGGGCCGGCCGCATG........................AAAAATGAAG.......... -240 -230 -220 -210 -200 -190 ]]]]]]]]]]]]]]]]]]]]]]]]] sub ACATAATGAATATAAAGACTGAATACCTGCTTTTACGTTTTAAAAGCAGGTTTTTTATAC hal ACATAATGAAAATAGCGA.......................................... ste ........................AGCGGCGTTGTCGGTTCAACCGTCTGTTTTT..... -180 -170 -160 -150 -140 -130 @@@@@@@@@@@@@@ sub ACAAAAACAGCTGGAAATAAAAAACCACCGAACTTTAGTTCGTATTTTTAGTG-ATTTTG hal .....................AAATAACAAAACAAACGTTCGTAAAATTTGTG-TGTTTC ste ............................CGAATATGAGTTCGCATTTTTGATGCATGGAT -120 -110 -100 -90 -80 -70 sub CTTTCCATTGTGTTACTATATCTATAGGAAGATTTCGTTAAAGAAACGGAGGCTTATTTT hal C........................................................... ste CATCACGATGTGATACAAT....................AACGGAACGGAG......... -60 -50 -40 -30 -20 -10 sub T hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...