Similar regions between promoters of yaaA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTGAGGAATTAAATATCTCTTTTAGTCCAAAATATATGCTGGATGCACTAAAGGTGCTTG hal ....................TTTAGTACAATAGAAA........................ ste ............................AAAGAATAGGCAGTTTGAAGGAAAG....... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAGGAGCAGAAATACGCGTAAGCTTTACAGGCGCAATGAGACCTTTCTTAATTCGCACGC hal .......................TTTACCGGTGCGATGAGTCCATTTGTATTAAGCCCAA ste .......AGACATTCAAATCAGCTTCACTGGGGCCATGCGGCCGTTCCTGTTGCGCCCGC -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGAATGATGAAACGATTGTACAGCTTATCCTTCCTGTCAGAACCTATTAATCCGATACAC hal CCGATCACGATCAATCACTTCATCTTTTCTCACCTGTGCGCACGTACTA........... ste TTCATACCGATTCGATGCTTCAGCTCATTTTGCCGGTGAGAACATATTGACCCACCGCCC -180 -170 -160 -150 -140 -130 ]]]]]]]]]]]]]]]]]]]] sub TGCTGCCGACCCGTCGGCAGCTTTTCTATTCGGTATCTGCTCCGACAAGTTTTCCCTTTC hal .................CATCTTTTCT...............................TC ste TCCT........GTGGGCGGATTTTC...............CCGACAACGCTGCTTTTTC -120 -110 -100 -90 -80 -70 sub CCTAATTCGTTTTTTTTTAGTACAATTAGATATTAGTGATATTTGAAAGAGGTCGATATA hal CATATTGCGTTT...TTTAGTACAAT...........GGTATTGGCGAGCGCTCAATA.. ste TCAAGTCCGAT.TTTTCCGGTAAAATAAAAGAATAGGCAG-TTTGAAGGAAAGCGA.... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...