Similar regions between promoters of yaaJ
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GTGCATTCTTGCTGTATGTTTTTAATGTCAGCTTGCCAAAGTCCATAATGATCATTGATG hal ..............................GCTTGGAAAGGATTAAGACGATGATGGATG ste .......................AAAATCGGCGTGCAATCGACCATAACG.......... -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TAAATAATCGGCCATTCATTTTGTCTCGCGTGCTCCTTTAATGATAAAATATGAGGAACG hal AGAAGAA................................................GAGGG ste .................................TTCTATGATGAAAAGAAAGGAGAAATG -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATTTTTTCTGTTTTTTTAGCGAGGGTTTCCCCCATATCGAATTCAAAATTATTGATCATG hal GTTTTTTATGCCTTTTT........................................... ste ACCGTTTGTGT.....................................TTATTCTCCATA -180 -170 -160 -150 -140 -130 < <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub T-CTACAATGAGAAGGGCTTTATCTGCTTTGGACAATCGACAGTCTCCTTTCCGTTTCAG hal ........TTAGAGGGGTTTTTTATGCCTT......................CGTCTCCC ste TTCTATGATGAAAAG............................................. -120 -110 -100 -90 -80 -70 sub TTATAGTTAATATGTAGCCTTTTTAGGCAATGAAAAAACTTTGAAAAGAGAGCTTATCCT hal TTATAAT-AATAGGTAG..........CTATGAGGAAATTTGAAAAAGGG.......... ste .........................................TGAAAAGAAAG........ -60 -50 -40 -30 -20 -10 sub T hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...