Similar regions between promoters of ybxA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CATACATCCGCAACGAGGTTGCAAACGAAGAAAATAATCAAGATGCACTTCAAAAATTAT hal ............................................................ ste ..TTCATCCGCAAGGAGGTCGCCAACAGCGAAACCGGCCAGGATGCGTTGCAAAAGCTGT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCTCTGACATTGCAACTCGTTACGAGGAGCGCCAAGGTGGATACACACGTATTATGAAGC hal ...................................GGCGGCAATCCACGTCTTTCGAAGC ste TCAGCGACATTGCGCCGCGCTACCAAGATCGCCAAGGCGGCTATACGCGCATTATGAAAC -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTGGTCCTCGCCGTGGTGACGGAGCACCAATGGCAATTATCGAATTGGTTTAATCACATA hal .................GACGGTGCACCAATGGCGATCATCGAACTTGTGTAATC..... ste TTGGTCCTCGCCGCGGTGACGGGGCGCCGATGGTCATTATTGAACTCGTGTAA-----CG -180 -170 -160 -150 -140 -130 sub TTTTTGTGTA-TCTAAAG-AAGGGCGGGACAGTTTCT----AACTGGATCTATGCCCTTT hal ...TTGTGTAATCCAAAGGAATAGCGGTA......................AAGCCCTTT ste GTTTC----A-TTTCAAC-AAGGGCGAGACAGTTTCGTTTGAACTGGATCTATGCCCTTT -120 -110 -100 -90 -80 -70 sub TTTTAGATACTGCAACTTTTAATAGAGAGAAAAGCAGAGCATTAGCTGAGAGGAGGCCGG hal TTTCGCTTTAAGGAAGTTTAACTATCGAGCAAGGAA........................ ste TTTTGTTTAC--CATCATTTAGCAG................................... -60 -50 -40 -30 -20 -10 sub TTTTCC hal ...... ste ...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...