Similar regions between promoters of ycbP
sub CTTGATCTCTTTTCATCATATTTCATTACTTCAGAAGTGATGACGGAGGGACAGGAGAAG hal ................................................GGACAGGGCTAT ste ....ATCTGTATTCCTCCTTGTTCAT.................................. -300 -290 -280 -270 -260 -250 sub TTTTTAAATTTATTCATCTAAAAACAGCAAACATAATGGGCTGTTGGGCATCAAAGCAGC hal TTTTTAATTTAA...AGCTGAAAAAAGAAAA.....................AAAGCAAC ste ...................AAAAACAACAACC............................ -240 -230 -220 -210 -200 -190 sub G---TCCGGTGCAGTACAAGCTTCACGTTTCCGCTGTCGAAGCGCCGCAGCCTCAATTCC hal GATATCATGCACAGTACTCGCTT..................................... ste ............................................................ -180 -170 -160 -150 -140 -130 sub TGGATTCACATCATTGACCTCTCCCCAGCAGATTTGCACCCGCCTCCGAAAAGAAATAAG hal ..........................................CCTCCCTTTAGAGGACAG ste ............................................................ -120 -110 -100 -90 -80 -70 sub GTTTAACTTTTTACATTTGAGGAATTATACATAACAAATCAAATGACAAAAGGAGGAATT hal GGCTA--TTTTTTAATTTAACGAATT..........AATCCAATCAAAAAGAGATCATTC ste .............................................ATAAAAAGAGGAAGT -60 -50 -40 -30 -20 -10 sub GTA hal GT. ste TTA -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...