Similar regions between promoters of yciC

sub CCGTTGACAAAAAGGAAAAAAGACCATACAATTTAAGTCGTAACAATTACGTTTTATGAT hal ................AAAATTCCTCTACAATACAAAGCGTAATTATTACGATTTAATTT ste ......ACAACCAGGAGAAA......TACAAGT-AATTATAATCGGTTAGGTTATATTAT -300 -290 -280 -270 -260 -250 sub AAATGGCTTATCATTGTCTGTGCATCTGTGAAAAGCGGAAAGGCATCGATTAAGGATCTT hal AAGGGGATT....................GAAAAGCGGA..................... ste A........................CTGATCAACCAGGAACTGTATTGATTAATGA.... -240 -230 -220 -210 -200 -190 sub GCTGTCGGCAAAGGCAAGGATTTGCGATGGGGAAAAGGATTAAACGCGGTTGGAGTCTTT hal ..................GATTAAAAATGGGGAAGATGATAAA................. ste ............................................................ -180 -170 -160 -150 -140 -130 sub ACTGATTTAGAAATCGGGCGGCAGCGAGAAATGAGCGCCAAAAGCTGCTCTACACCATTG hal ............................................................ ste ............................................................ -120 -110 -100 -90 -80 -70 @@@ @@@@@@@@@@@@@@@@@ sub TACATACGGCGAAGTATTCAATTT-----AAATCGTAATCATTCTATTTTAATGGAGGCA hal ..............TCTACAATAC-----AAAGCGTAATTATTACGATTTAAT....... ste ..........GAAATATTAAAATTCTTGGAACTACGAATCAT-CTAATATAAT....... -60 -50 -40 -30 -20 -10 sub CTATT hal ..... ste ..... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...