Similar regions between promoters of ydbF

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTTTCCGCCTGATTTTTCGTTCACCAGATCAGCGAATTTATTGGCGGCCAGCCCTTTTGG hal ...........ATATGTCGTTCA..................................... ste TTTTACACCTTTCGTTTCTTTC...................TGGCGGGCAGAATATTTG. -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CGTATTTTCAGCAACCACGTGGCTGAATTTAAACACGATTTGATCCTGCAGGCCTTCCTG hal ............................................................ ste .....TTGAAGCAAAAAAGCGGCTGGA.TTCAAGAAGATTTGGT................ -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GTCGTCATCATAAACAATCTTTTTATTGCCGGTATGATCATGGAATCCGATAAATAAAGC hal .........AGAATCATTCTTTAT.............TTATGGTATAGTAATAAGAAAGC ste ..............................................CCGATTCATATGGC -180 -170 -160 -150 -140 -130 <<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GGTTGCAATTCCAGCGAT-CATCAGTGCGAGACATGCAAGCAAACTCTTCATGAAAAGCC hal GAT.........AGCGATACAGTAGGGAGAGA................TCTTGACAAGTT ste ATGTCCAA---CAGCCAT-CACGACTGCCAAAAAGG........................ -120 -110 -100 -90 -80 -70 sub CTCCCCTATGTTAAGGATAATGGGGGCTATGACATTCGTAAAGACCTGAAAGGAGAAGCT hal CTCCCTTAT...AAGGATAAT........................CAGAAAGGATAA... ste ............................................................ -60 -50 -40 -30 -20 -10 sub G hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...