Similar regions between promoters of ydcK
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCGATATTGTGACAGTTTGGGTTGACGGCGTAGATGTACAAAAAGGCAGAGTATCGCTGT hal .....................................ACAATTTGACTTTGTAGCGATTT ste ......TCGTCAAAGTATGGGTCGAGCATGTCGATGTGGCGAAGGGAAGAATATCGCTGT -300 -290 -280 -270 -260 -250 >>>>>>>> >>>>> > ]]]]]] ]]]]]]]]]]]] sub CTATGGTA------AAATA-----------AAAGCACTGC-TTACGAGCAGTGTTTTTTC hal TTATGAGC------AAAT...................TGC-TTCGGAT-ATTCTTTTTTT ste CGATGGTGCCGCCGAAAGAGTGAAATGGAGAAAGCACTGCCTTAGGAGCAGTGTTTTCTC -240 -230 -220 -210 -200 sub CTATAGAAATACCAGCATTGATTCAGCAGTTTAATTTGGTAATTATCTTTTTCAAGGAAC hal TGGTAATAAAACCAACATTGGTTCAACAATTTGACTTTGTAGCGATTTTTATGAGCAAAT ste CGATAAAAAAACCAGCATTGGTTCAACAGTTTAATTTGCTCACGGTTTTTCTCATAGTAG -190 -180 -170 -160 -150 -140 sub GCTTTTTGCATCTGCTTTTTAAGCCAATTTGGCATAGGCTCATTCCTCCTCA-GCTTTTA hal GCAGTTCGCAATTGGTTGATGAGCCAGTTGGGCATTTTGCCATCTCCCCTAACGGTATGA ste GCTCGTCTCATCTGATTTTTCAGCCATGTAGGCAAAATCAGTCACCTCCCTG-AC----- -130 -120 -110 -100 -90 -80 sub TCATAAGAGGGACAGTGATTACCA-TAT-TGTATGCGAACGGTGAATTGTCCCGTTCAAT hal TCGTATGA..GTCAGTGTTTAACACTAT-TTTATG......................... ste -----AGTGGAAAGGTAAT----A-TATGTGTATGT-AATGGTGAATTGTCCTGTGCCAT -70 -60 -50 -40 -30 sub GTTTTTTAAGTGAGGTGCACC hal ..................... ste GATTTTTCAGCCATGT..... -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...