Similar regions between promoters of ydeI
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTAGTCAGTATAGCTAGTGTTGCCGTAACCTTATGCATTGGCAAGAATAAAAAAGATA- hal ............................................................ ste ...........................................AACACTATAAAATATAC -300 -290 -280 -270 -260 -250 >>>>> ]]] sub TATAATCATCGAATTGTTATTTTTTCAGATTGTCAGTGAAATAATTATACAAAAAGAGAA hal .......ATGGAATTGTTA..TTTTCAGTTTCGCACTCA.....TGATCGAAAAATTGAA ste TGTACATATATAATTTATAT.........TTTTCACTTTTATAAA-ATGGAAAAAGAATA -240 -230 -220 -210 -200 -190 ]]]]]]]]]]]]]]] sub GGCTTGTGGGCCTTCTTTTTTTGTTGTTGCATCATCCCCACTTTGAGCTTAATCTATTGA hal GAGAGGTGTTCCTT.........................................ATGGA ste G......................................................ATGGA -180 -170 -160 -150 -140 -130 sub ATAATAAGAGAAGGAACCTATAGAAGAATAAAATAAATACCGAGATGTCAAAAATAAAAC hal ATTGTTAACGGTGAATCTTATAAAATAGCCCATTAAAT...................... ste AAAAGAATAGAACCTACCT......................................... -120 -110 -100 -90 -80 -70 sub TGGACTTCATTATTGTGAATTCACGTAAATGTAAAAAGATTGGAAAGAGGGGAATTCCTT hal TGGAATTGTTAACGGTGAAT..............AAAAATTG--AAGAGAGGTGTTCCTT ste ..........................AAATGGAAAAAGAATAGAA............... -60 -50 -40 -30 -20 -10 sub C hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...